Vandenkoornhuyse P., Leyval C., Bonnin I. 2001. High genetic diversity in AM fungi: evidence for recombination events. Heredity, 87: 243-253.

Vandenkoornhuyse P., Baldauf S.L., Straczek J., Leyval C., Young J.P.W. 2002. Extensive and novel fungal diversity in plant roots. Science, 295: 2051(IC 30,028)

Vandenkoornhuyse P., Husband R., Fitter A.H., Young J.P.W. 2002. Arbuscular mycorrhizal community composition with co-occurring plant species from a grassland ecosystem. Molecular Ecology, 11: 1555-1564.

Vandenkoornhuyse P., Ridgeway K., Watson I.J., Fitter A.H., Young J.P.W. 2003.Co-existing grass species have distinctive arbuscular mycorrhizal communities. Molecular Ecology 12, 3085-3095.

Johnson D.*, Vandenkoornhuyse P.*, Leake J.R., Gilbert L., Booth R.E., Grime J.P., Young J.P.W., Read D.J., 2004. Plant communities affect arbuscular mycorrhizal fungal diversity and community composition in grassland microcosms. New Phytologist  161: 503-515.* first and second authors have contributed equally

Vandenkoornhuyse P., S. Mahé, Ineson P., Staddon P., Ostle N., Fitter A.H., Young J.P.W. 2008. Active root-inhabiting microbes identified by rapid incorporation of plant-derived carbon into RNA. Proc Natl Acad Sci USA 104: 16970-16975

Bar-Hen A, Madriassou M, Poursat M.A., Vandenkoornhuyse P. 2008 Influence functions for robust phylogenetic trees. Mol Biol Evol  25:869–873.

Monard C, Martin-Laurent F, Vecchiato C, Francez AJ, Vandenkoornhuyse P, Binet F 2008. Combined effect of bioaugmentation and bioturbation on atrazine degradation in soil Soil Biol Biochem in press