Resources


Head of genomics facility at University of Rennes and western France.
For details visit the following websites :
Human and Environmental genomics platform
and Genomic faclities in western France


Detailed methodologies to perform SIP-RNA experiments are now detailed in : Le Van A, Duhamel M, Quaiser A, Vandenkoornhuyse P (2015) SIP-RNA to study the plant/fungi interaction. In Microbial Environmental Genomics, Methods in Molecular Biology series. Springer

Our curated SSU rRNA and EF1-alpha sequence database (~11.000 and ~1200 sequences respectively) :

Database - PHYMYCO-DB : A Curated Database for Analyses of Fungal Diversity and Evolution (link)

Reference:

Mahe S, Duhamel M, Le Calvez T, Guillot L, Sarbu L, Bretaudeau A, Collin O, Dufresne A, Kiers ET, Vandenkoornhuyse P 2012. PHYMYCO-DB: A Curated Database for Analyses of Fungal Diversity and Evolution. PLoS ONE 7 : e43117 (link)

Philippe Vandenkoornhuyse

Phylogenetic tool - Influence functions for robust phylogenetic trees

Reference

Bar-Hen A, Madriassou M, Poursat M.A., Vandenkoornhuyse P 2008 Influence functions for robust phylogenetic trees. Mol Biol Evol 25:869-873. (link)

Philippe Vandenkoornhuyse