31 publication(s) :

Articles

1 - 
L. Burté, C. Cravotta, L. Bethencourt, J. Farasin, M. Pédrot, A. Dufresne, M.-F. Gerard, C. Baranger, T. Le Borgne, L. Aquilina - 
Kinetic study on clogging of a geothermal pumping well triggered by mixing-induced biogeochemical reactions - 
Environmental Science & Technology, American Chemical Society, 2019, 53 (10), pp.5848-5857.  - 
DOI : https://doi.org/10.1021/acs.est.9b00453 - 
Pubmed : 31038936 - 
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2 - 
C. Rey, N. Hengl, S. Baup, M. Karrouch, A. Dufresne, H. Djeridi, R. Dattani, F. Pignon - 
Velocity, stress and concentration fields revealed by micro-PIV and SAXS within concentration polarization layers during cross-flow ultrafiltration of colloidal Laponite clay suspensions - 
Journal of Membrane Science, Elsevier, 2019, 578, pp.69-84.  - 
DOI : https://doi.org/10.1016/j.memsci.2019.02.019 - 
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3 - 
C. Rey, N. Hengl, S. Baup, M. Karrouch, E. Gicquel, A. Dufresne, H. Djeridi, R. Dattani, Y. Jin, F. Pignon - 
Structure, Rheological Behavior, and in Situ Local Flow Fields of Cellulose Nanocrystal Dispersions during Cross-Flow Ultrafiltration - 
ACS Sustainable Chemistry & Engineering, American Chemical Society, 2019, 7 (12), pp.10679-10689.  - 
DOI : https://doi.org/10.1021/acssuschemeng.9b01333 - 
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4 - 
L. Aquilina, C. Roques, A. Boisson, V. Vergnaud-Ayraud, T. Labasque, H. Pauwels, E. Petelet-Giraud, M. Pettenati, A. Dufresne, L. Bethencourt, O. Bour - 
Autotrophic denitrification supported by biotite dissolution in crystalline aquifers (1): New insights from short-term batch experiments - 
Science of the Total Environment, Elsevier, 2018, 619-620, pp.842-853.  - 
DOI : https://doi.org/10.1016/j.scitotenv.2017.11.079 - 
Pubmed : 29734630 - 
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5 - 
C. Roques, L. Aquilina, A. Boisson, V. Vergnaud-Ayraud, T. Labasque, L. Longuevergne, M. Laurencelle, A. Dufresne, J.-R. de Dreuzy, H. Pauwels, O. Bour - 
Autotrophic denitrification supported by biotite dissolution in crystalline aquifers: (2) transient mixing and denitrification dynamic during long-term pumping - 
Science of the Total Environment, Elsevier, 2018, 619-620, pp.491-503.  - 
DOI : https://doi.org/10.1016/j.scitotenv.2017.11.104 - 
Pubmed : 29156269 - 
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6 - 
A. Lê Van, A. Quaiser, M. Duhamel, S. Michon-Coudouel, A. Dufresne, P. Vandenkoornhuyse - 
Ecophylogeny of the endospheric root fungal microbiome of co-occurring Agrostis stolonifera - 
PeerJ, PeerJ, 2017, 5, pp.e3454.  - 
DOI : https://doi.org/10.7717/peerj.3454 - 
Pubmed : 28607843 - 
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7 - 
F. Ballaud, A. Dufresne, A.-J. Francez, J. Colombet, T. Sime-Ngando, A. Quaiser - 
Dynamics of Viral Abundance and Diversity in a Sphagnum-Dominated Peatland: Temporal Fluctuations Prevail Over Habitat - 
Frontiers in Microbiology, Frontiers Media, 2016, 6, pp.1494.  - 
DOI : https://doi.org/10.3389/fmicb.2015.01494 - 
Pubmed : 26779149 - 
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8 - 
T. Bouchez, A. Blieux, S. Dequiedt, I. Domaizon, A. Dufresne, S. Ferreira, J. Godon, J. Hellal, C. Joulian, A. Quaiser, F. Martin-Laurent, A. Mauffret, J. Monier, P. Peyret, P. Schmitt-Koplin, O. Sibourg, E. D’oiron, A. Bispo, I. Deportes, C. Grand, P. Cuny, A. Maron, L. Ranjard - 
Molecular microbiology methods for environmental diagnosis - 
Environmental Chemistry Letters, Springer Verlag, 2016, 14 (4), pp.423-441.  - 
DOI : https://doi.org/10.1007/s10311-016-0581-3 - 
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9 - 
T. Bouchez, A. L. Blieux, S. Dequiedt, I. Domaizon, A. Dufresne, S. Ferreira, J.-J. Godon, J. Hellal, C. Joulian, A. Quaiser, F. Martin-Laurent, A. Mauffret, J.-M. Monier, P. Peyret, P. Schmitt-Koplin, O. Sibourg, E. d'Oiron, A. Bispo, I. Deportes, C. Grand, P. Cuny, P.-A. Maron, L. Ranjard - 
Molecular microbiology methods for environmental diagnosis - 
Environmental Chemistry Letters, Springer Verlag, 2016, 14 (4), pp.423--441.  - 
DOI : https://doi.org/10.1007/s10311-016-0581-3 - 
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10 - 
A. Quaiser, M. Krupovic, A. Dufresne, A.-J. Francez, S. Roux - 
Diversity and comparative genomics of chimeric viruses in Sphagnum-dominated peatlands - 
Virus Evolution, Oxford University Press, 2016, 2 (2), pp.vew025.  - 
DOI : https://doi.org/10.1093/ve/vew025 - 
Pubmed : 29492276 - 
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11 - 
L. Aquilina, V. Vergnaud-Ayraud, A. Armandine Les Landes, H. Pauwels, P. Davy, E. Petelet Giraud, T. Labasque, C. Roques, E. Chatton, O. Bour, S. Ben Maamar, A. Dufresne, M. Khaska, C. Le Gal La Salle, F. Barbecot - 
Impact of climate changes during the last 5 million years on groundwater in basement aquifers - 
Scientific Reports, Nature Publishing Group, 2015, 5, pp.14132.  - 
DOI : https://doi.org/10.1038/srep14132 - 
Pubmed : 26392383 - 
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12 - 
S. Ben Maamar, L. Aquilina, A. Quaiser, H. Pauwels, S. Michon-Coudouel, V. Vergnaud-Ayraud, T. Labasque, C. Roques, B. W. Abbott, A. Dufresne - 
Groundwater Isolation Governs Chemistry and Microbial Community Structure along Hydrologic Flowpaths - 
Frontiers in microbiology, Frontiers Research Foundation, 2015, 6, pp.1457.  - 
DOI : https://doi.org/10.3389/fmicb.2015.01457 - 
Pubmed : 26733990 - 
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13 - 
A. Dufresne, F. Ribeiro, G. Tréglia - 
How to derive tight-binding spd potentials? Application to zirconium - 
Journal of Physics: Condensed Matter, IOP Publishing, 2015, 27 (33), pp.336301.  - 
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14 - 
Flavia Nunes, L. Aquilina, J. de Ridder, A.-J. Francez, A. Quaiser, J.-P. Caudal, P. Vandenkoornhuyse, A. Dufresne - 
Time-scales of hydrological forcing on the geochemistry and bacterial community structure of temperate peat soils - 
Scientific Reports, Nature Publishing Group, 2015, 5, pp.14612.  - 
DOI : https://doi.org/10.1038/srep14612 - 
Pubmed : 26440376 - 
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15 - 
A. Quaiser, A. Dufresne, F. Ballaud, S. Roux, Y. Zivanovic, J. Colombet, T. Sime-Ngando, A.-J. Francez - 
Diversity and comparative genomics of Microviridae in Sphagnum-dominated peatlands - 
Frontiers in microbiology, Frontiers Research Foundation, 2015, 6, pp.375.  - 
DOI : https://doi.org/10.3389/fmicb.2015.00375 - 
Pubmed : 25972855 - 
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16 - 
P. Vandenkoornhuyse, A. Quaiser, M. Duhamel, A. Lê Van, A. Dufresne - 
The importance of the microbiome of the plant holobiont - 
New Phytologist, Wiley, 2015, 206 (4), pp.1196-1206.  - 
DOI : https://doi.org/10.1111/nph.13312 - 
Pubmed : 25655016 - 
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17 - 
M.-C. Ciobanu, G. Burgaud, A. Dufresne, A. Breuker, V. Rédou, S. Ben Maamar, F. Gaboyer, O. Vandenabeele-Trambouze, J. S. Lipp, A. Schippers, P. Vandenkoornhuyse, G. Barbier, M. Jebbar, A. Godfroy, K. Alain - 
Microorganisms persist at record depths in the subseafloor of the Canterbury Basin. - 
ISME Journal, Nature Publishing Group, 2014, pp.1370-80.  - 
DOI : https://doi.org/10.1038/ismej.2013.250 - 
Pubmed : 24430485 - 
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18 - 
A. Quaiser, X. Bodi, A. Dufresne, D. Naquin, A.-J. Francez, A. Dheilly, S. Coudouel, M. Pédrot, P. Vandenkoornhuyse - 
Unraveling the Stratification of an Iron-Oxidizing Microbial Mat by Metatranscriptomics - 
PLoS ONE, Public Library of Science, 2014, 9 (7), pp.e102561.  - 
DOI : https://doi.org/10.1371/journal.pone.0102561 - 
Pubmed : 25033299 - 
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Chapitres d'ouvrages scientifiques

19 - 
A. Quaiser, A. Dufresne, S. Michon-Coudouel, M. Biget, P. Vandenkoornhuyse - 
Large-scale sequence-based information-novel understanding of ecology and novel avenues to test ecological hypotheses - 
Abad Chabbi, Henry W. Loescher Terrestrail Ecosystem Research Infrastructures: Challenges, New Developments and Perspectives, CRC Press, pp.165-192, 2017, 978-1-4987-5131-5.  - 
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Communications

20 - 
L. Bethencourt, Olivier Bochet, L. Aquilina, A. Quaiser, T. Le Borgne, M. Biget, S. Michon-Coudouel, J. Farasin, T. Labasque, A. Dufresne - 
Un nouveau genre de bactéries oxydant le fer domine les zones de transitions redox des aquifères fracturés - 
IXe Colloque de l'Association Francophone d'Ecologie Microbienne (AFEM 2019), Nov 2019, Bussang, France.  - 
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21 - 
T. Le Borgne, A. Bandopadhyay, Olivier Bochet, A. Dufresne, J. Farasin, L. Bethencourt, M. Pédrot, L. Aquilina, P. Davy - 
Dynamics of reactive mixing hot spots from hyporheic zones to fractured media - 
American Geophysical Union 2018, Fall Meeting, Dec 2018, Washington, United States. pp.H13E-01.  - 
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22 - 
L. Bethencourt, L. Aquilina, M. Biget, Olivier Bochet, J. Farasin, T. Le Borgne, T. Labasque, S. Michon-Coudouel, A. Dufresne - 
Abondance et diversité des bactéries oxydantes du fer de la famille des Gallionellaceae dans les aquifères de socle fracturé - 
VIIIe Colloque de l'Association Francophone d'Ecologie Microbienne, Oct 2017, Camaret, France.  - 
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23 - 
Olivier Bochet, T. Le Borgne, L. Bethencourt, L. Aquilina, A. Dufresne, M. Pédrot, J. Farasin, B. W. Abbott, T. Labasque, E. Chatton, N. Lavenant, C. Petton - 
Groundwater mixing at fracture intersections triggers massive iron-rich microbial mats - 
. American Geophysical Union Fall Meeting 2017, Dec 2017, New Orleans, United States. pp.H31F-1570.  - 
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24 - 
A. Hubert, J. Farasin, H. Tabuteau, A. Dufresne, Y. Méheust, T. Le Borgne - 
Dynamics of Reactive Microbial Hotspots in Concentration Gradient. - 
American Geophysical Union Fall Meeting 2017, Dec 2017, New Orleans, United States. pp.H33E-1730.  - 
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25 - 
T. Le Borgne, Olivier Bochet, M. Klepikova, P. Kang, A. Shakas, L. Aquilina, A. Dufresne, N. Linde, M. Dentz, O. Bour - 
Coupled transport, mixing and biogeochemical reactions in fractured media: experimental observations and modelling at the Ploemeur fractured rock observatory - 
. American Geophysical Union Fall Meeting 2016, American Geophysical Union, Dec 2016, San Francisco, United States. pp.H54C-04.  - 
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26 - 
Olivier Bochet, A. Dufresne, M. Pédrot, E. Chatton, T. Le Borgne, T. Labasque, A. Et - 
Biofilm development in a hotspot of mixing between shallow and deep groundwater in a fractured aquifer: field evidence from joint flow, chemical and microbiological measurements - 
. AGU Fall Meeting 2015, American Geophysical Union, Dec 2015, San Francisco, United States. pp.B53H-06.  - 
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Ouvrages scientifiques

27 - 
T. Bouchez, A. L. Blieux, S. Dequiedt, I. Domaizon, A. Dufresne, S. Ferreira, J.-J. Godon, J. Hellal, C. Joulian, A. Quaiser, F. Martin, A. Mauffret, J. M. Monier, P. Peyret, P. Schmitt-Koplin, O. Sibourg, E. D’oiron Verame, A. Bispo, I. Deportes, C. Grand, P. Cuny, P.-A. Maron, L. Ranjard - 
La microbiologie moléculaire au service du diagnostic environnemental. Synthèse de Recherche. Contrat n°1406C0050. Projet de recherche coordonné par : "Observatoire des sols vivants - 
". ADEME Agence de l'Environnement et de la Maitrise de l'Energie, 34 p., 2016.  - 
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Poster

28 - 
A. Hubert, J. Farasin, H. Tabuteau, A. Dufresne, Y. Méheust, T. Le Borgne - 
Dynamics of reactive microbial hotspots in concentration and velocity gradients - 
Computer Methods in Water Resources (CMWR) 2018, Jun 2018, Saint-Malo, France. 2018, Proceedings.  - 
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29 - 
L. Bethencourt, Olivier Bochet, T. Le Borgne, L. Aquilina, M. Biget, E. Chatton, J. Farasin, T. Labasque, S. Michon-Coudouel, A. Dufresne - 
Fracture-induced mixing of recent and ancient groundwaters controls the distribution of iron-oxidizing bacteria in hard-rock aquifers - 
10th International Symposium on Subsurface Microbiology (ISSM 2017), Nov 2017, Rotorua, New Zealand.  - 
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30 - 
C. Roques, L. Aquilina, V. Vergnaud-Ayraud, A. Boisson, T. Labasque, L. Longuevergne, S. Ben Maamar, A. Dufresne, O. Bour - 
Long-term Denitrification Processes and Kinetics in a Crystalline Aquifer subject to Pumping from 1991 - 
Long-term Denitrification Processes and Kinetics in a Crystalline Aquifer subject to Pumping from 1991. European Geosciences Union General Assembly 2017, Apr 2017, Vienne, Austria. Geophysical Research Abstracts, 19, pp.EGU2017-12213, 2017.  - 
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31 - 
Olivier Bochet, T. Le Borgne, M. Pédrot, T. Labasque, N. Lavenant, C. Petton, A. Dufresne, S. Ben Maamar, E. Chatton, J. Bondet de la Bernardie, L. Aquilina - 
Biofilm development in a hotspot of mixing between shallow and deep groundwater in a fractured aquifer: field evidence from joint flow, chemical and microbiological characterization - 
EGU General Assembly 2015, Apr 2015, Vienne, Austria. Geophysical Research Abstracts, 17, pp.EGU2015-11928, 2015.  - 
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